12097 (Lhcx6) Chloroa_b-bind
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
12097 chr_23 (Lhcx6) Chloroa_b-bind 366608 367378 + Chloroa_b-bind

Synonyms

NCBI ID Ensembl Genomes exon ID
7448908 Thaps12097.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0048

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0156
 0.33

Most Highly Correlated Transcripts

bd897

(bd897) NA
0.9071

268474

PLN02657
0.8987

33008

PLN02338
0.8896

6524

phytoene_desat
0.8758

5815

hypothetical protein
0.8724

5077

PLN00015
0.8693

38879

(Lhcx2) Chloroa_b-bind
0.8655

35712

Phosphoglycerate_kinase
0.8634

32924

RPE
0.8591

3741

(ELO1) ELO
0.8474

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Chloroa_b-bind Chlorophyll A-B binding protein; Chlorophyll A-B binding protein. cl02879 128.964 4.09E-37 90 - 224 specific 249913
Chloroa_b-bind superfamily Chlorophyll A-B binding protein; Chlorophyll A-B binding protein. - 128.964 4.09E-37 90 - 224 superfamily 261492

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
444 Not available 188478 238335 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0009765 GO:0016020 -

GO:0009765

photosynthesis, light harvesting

Details: 
Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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