12234 Carboxyl_trans
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
12234 chr_2 Carboxyl_trans 1854782 1862142 + Carboxyl_trans

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0023

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0104
 0.31

Most Highly Correlated Transcripts

bd218

(bd218) Chloroa_b-bind superfamily
0.9662

bd1820

(bd1820) Fasciclin
0.941

bd794

(bd794) NA
0.9348

bd1378

(bd1378) atpI
0.9317

bd1387

(bd1387) psbE
0.9296

bd1342

(bd1342) psaL
0.9288

bd1304

(bd1304) Ycf4
0.9274

bd1160

(bd1160) Chloroa_b-bind superfamily
0.927

bd1474

(bd1474) phytoene_desat
0.9251

bd1306

(bd1306) NA
0.9247

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-... cl11404 66.2856 1.04E-12 694 - 758 specific 133459
Biotinyl_lipoyl_domains superfamily Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the... - 66.2856 1.04E-12 694 - 758 superfamily 264355
ATP-grasp_4 superfamily ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent... - 188.279 3.28E-53 162 - 389 superfamily 266590
Biotin_carb_C Biotin carboxylase C-terminal domain; Biotin carboxylase is a component of the acetyl-CoA... cl08365 116.033 1.76E-29 429 - 535 specific 251532
Biotin_carb_C superfamily Biotin carboxylase C-terminal domain; Biotin carboxylase is a component of the acetyl-CoA... - 116.033 1.76E-29 429 - 535 superfamily 263607
CPSase_L_chain superfamily Carbamoyl-phosphate synthase L chain, N-terminal domain; Carbamoyl-phosphate synthase catalyses the... - 97.1691 5.79E-23 36 - 152 superfamily 249744
CPSase_L_chain superfamily Carbamoyl-phosphate synthase L chain, N-terminal domain; Carbamoyl-phosphate synthase catalyses the... - 97.1691 5.79E-23 36 - 152 superfamily 249744
Carboxyl_trans Carboxyl transferase domain; All of the members in this family are biotin dependent carboxylases.... - 461.713 7.17E-145 1627 - 2179 multi-dom 250315
AccC Biotin carboxylase [Lipid metabolism] - 405.112 2.21E-125 36 - 542 multi-dom 223516
ACC_central Acetyl-CoA carboxylase, central region; The region featured in this family is found in various... - 312.721 2.70E-90 759 - 1501 multi-dom 254731

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
13920 PHATRDRAFT_54926 PHATRDRAFT_54926 274583 318156 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0016874 GO:0005524 GO:0008152 -

GO:0016874

ligase activity

Details: 
Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

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