262521 WD40 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
262521	chr_5	WD40 superfamily	1161731	1163918	-	WD40 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450062	Thaps262521.5, Thaps262521.2, Thaps262521.4, Thaps262521.7, Thaps262521.3, Thaps262521.1, Thaps262521.6

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0322

Most Highly Correlated Transcripts

12899 AAA 0.9315	39741 (APM3) AP-3_Mu3_Cterm 0.9054	35798 AAA 0.8998	21839 Symplekin_C 0.8956	bd1866 (bd1866) NA 0.8946	261324 PLN02724 0.8853
28004 hypothetical protein 0.8853	269821 S_TKc 0.8843	22716 TH1 superfamily 0.881	6648 hypothetical protein 0.8807

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	134.385	1.36E-35	208 - 500	superfamily	238121
COG2319		FOG: WD40 repeat [General function prediction only]	-	94.3851	7.83E-21	183 - 540	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_43349	PHATRDRAFT_43349	202782	314469	430969	Cre01.g020400.t1.2	AT1G73720.1	260715

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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