17039 MmsB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
17039 chr_7 MmsB 105681 107345 - MmsB

Synonyms

NCBI ID Ensembl Genomes exon ID
7450637 Thaps17039.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0052

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0052
 0.43

Most Highly Correlated Transcripts

bd794

(bd794) NA
0.9096

261357

NAD_binding_8 superfamily
0.9056

bd668

(bd668) NA
0.9052

bd1192

(bd1192) Acyl_ACP_Desat
0.9027

bd624

(bd624) Glyco_transf_34 superfamily
0.9007

bd1378

(bd1378) atpI
0.8948

bd1290

(bd1290) atpH
0.8924

bd1313

(bd1313) psbH
0.8908

bd1387

(bd1387) psbE
0.8868

bd598

(bd598) atpG
0.8825

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase; The NAD binding domain of 6-... cl19126 118.709 2.89E-31 1 - 180 specific 251959
F420_oxidored superfamily NADP oxidoreductase coenzyme F420-dependent; NADP oxidoreductase coenzyme F420-dependent. - 118.709 2.89E-31 1 - 180 superfamily 267479
NAD_binding_11 superfamily NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; 3-Hydroxyisobutyrate is a central... - 93.3098 1.74E-22 183 - 305 superfamily 258970
NAD_binding_11 superfamily NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; 3-Hydroxyisobutyrate is a central... - 93.3098 1.74E-22 183 - 305 superfamily 258970
MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] - 195.114 1.78E-57 1 - 306 multi-dom 224995

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11318 PHATRDRAFT_11318 264261 247447 Not available Not available AT1G18270.3 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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