17262 (OGG) ogg
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
17262 chr_7 (OGG) ogg 1718641 1721289 + ogg

Synonyms

NCBI ID Ensembl Genomes exon ID
7447182 Thaps17262.3, Thaps17262.1, Thaps17262.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0232

Most Highly Correlated Transcripts

3580

ANK
0.9121

36007

Aldolase_II superfamily
0.9111

12899

AAA
0.9063

268443

SAICAR_synt_Sc
0.8943

23667

hypothetical protein
0.892

263785

(Tp_TAZ4_PHD2_ZZ2) KAT11 superfamily
0.8829

23284

hypothetical protein
0.8812

270120

Uup
0.8805

22465

PTZ00169
0.879

24525

hypothetical protein
0.8776

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase... cl19066 110.024 1.87E-27 646 - 829 specific 238013
ENDO3c superfamily endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase... - 110.024 1.87E-27 646 - 829 superfamily 267419
OGG_N superfamily 8-oxoguanine DNA glycosylase, N-terminal domain; The presence of 8-oxoguanine residues in DNA can... - 107.351 5.27E-27 539 - 648 superfamily 254525
OGG_N superfamily 8-oxoguanine DNA glycosylase, N-terminal domain; The presence of 8-oxoguanine residues in DNA can... - 107.351 5.27E-27 539 - 648 superfamily 254525
UDG_like superfamily Uracil-DNA glycosylases (UDG) and related enzymes; Uracil-DNA glycosylases (UDG) catalyzes the... - 98.2243 1.57E-23 236 - 446 superfamily 260455
ogg 8-oxoguanine DNA-glycosylase (ogg); All proteins in this family for which functions are known are 8... - 214.39 1.11E-62 533 - 833 multi-dom 211589

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47529 PHATRDRAFT_47529 186086 173883 234897 Cre01.g063632.t1.1 AT1G21710.1 479501

KEGG

KEGG description KEGG Pathway
Base excision repair map03410

GO Terms

GO:0006284 GO:0004844 GO:0016799 GO:0017065 GO:0019104 -

GO:0006284

base-excision repair

Details: 
In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
GO Category: 
BP

GO:0004844

uracil DNA N-glycosylase activity

Details: 
Catalysis of the cleavage of the N-C1' glycosidic bond between the damaged DNA base and the deoxyribose sugar, releasing a free base and leaving an apyrimidinic (AP) site. Enzymes with this activity recognize and remove uracil bases in DNA that result from the deamination of cytosine or the misincorporation of dUTP opposite an adenine.
GO Category: 
MF

GO:0016799

hydrolase activity, hydrolyzing N-glycosyl compounds

Details: 
Catalysis of the hydrolysis of any N-glycosyl bond.
GO Category: 
MF

GO:0017065

single-strand selective uracil DNA N-glycosylase activity

Details: 
Catalysis of the cleavage of the N-C1' glycosidic bond between the damaged DNA base and the deoxyribose sugar, releasing a free base and leaving an apyrimidinic (AP) site. Enzymes with this activity recognize and remove uracil bases present in single-stranded DNA.
GO Category: 
MF

GO:0019104

DNA N-glycosylase activity

Details: 
Catalysis of the removal of damaged bases by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic/apyrimidinic (AP) site.
GO Category: 
MF

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