17910 UBCcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
17910	chr_7	UBCc	1060387	1061094	-	UBCc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447061	Thaps17910.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0448

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0107	0.36	0.0011 0.0092

Most Highly Correlated Transcripts

9860 hypothetical protein 0.8535	263610 COG3899 0.839	261357 NAD_binding_8 superfamily 0.835	263599 COG3899 0.8342	261392 NPR2 superfamily 0.823	18434 PIPKc superfamily 0.8151
9866 hypothetical protein 0.812	10906 hypothetical protein 0.8046	10588 hypothetical protein 0.8042	11938 NADB_Rossmann superfamily 0.8018

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UBCc		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	cl00154	134.637	1.93E-39	7 - 146	specific	238117
UBCc superfamily		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	-	134.637	1.93E-39	7 - 146	superfamily	260221

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_37077	PHATRDRAFT_37077	277361	314342	365968	Cre08.g372400.t1.2	AT5G50430.2	491377

KEGG

KEGG description	KEGG Pathway
Protein processing in endoplasmic reticulum	map04141

GO Terms

GO:0004840 GO:0006464 GO:0006512 GO:0004842 -

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