18388 UBCcThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
18388	chr_12	UBCc	300498	301747	+	UBCc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445785	Thaps18388.2, Thaps18388.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0271

Most Highly Correlated Transcripts

31758 UBCc 0.8132	bd1939 (bd1939) NA 0.804	263554 SK 0.7835	bd381 (bd381) NA 0.7786	bd1876 (bd1876) NatB_MDM20 superfamily 0.7647	bd1709 (bd1709) NA 0.7476
37240 LRR_9 0.7442	bd1807 (bd1807) RRS1 superfamily 0.7386	262616 (MYB22) 0.7379	bd524 (bd524) NA 0.7348

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UBCc		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	cl00154	144.652	5.13E-42	113 - 256	specific	238117
UBCc superfamily		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	-	144.652	5.13E-42	113 - 256	superfamily	260221

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_5608	PHATRDRAFT_5608	242871	262390	Not available	Cre10.g430050.t1.2	Not available	326520

KEGG

KEGG description	KEGG Pathway
Ubiquitin mediated proteolysis	map04120

GO Terms

GO:0004840 GO:0006464 GO:0006512 GO:0004842 -

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