20674 WD40 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
20674	chr_1	WD40 superfamily	707160	708884	-	WD40 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449168	Thaps20674.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0397

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0073	0.47	0.000041 8.2

Most Highly Correlated Transcripts

21133 COG3899 0.8792	24492 Lipase_3 0.8698	23598 COG3899 0.8698	25198 HA 0.8652	25125 hypothetical protein 0.8651	21535 hypothetical protein 0.8616
24796 hypothetical protein 0.8616	10379 hypothetical protein 0.86	22549 hypothetical protein 0.8593	261539 PSP1 0.8564

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	66.5896	2.16E-12	87 - 317	superfamily	238121
COG2319		FOG: WD40 repeat [General function prediction only]	-	64.7247	2.39E-11	2 - 299	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	234101	318437	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments