2122 GIY-YIG_SLX1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2122 chr_2 GIY-YIG_SLX1 229237 231643 - GIY-YIG_SLX1

Synonyms

NCBI ID Ensembl Genomes exon ID
7442203 Thaps2122.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0075

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0256
 0.42

Most Highly Correlated Transcripts

263579

2A0109
0.8817

13175

COG4178
0.8755

2910

Motor_domain superfamily
0.8722

bd1091

(bd1091) NA
0.8675

8748

Cnd1
0.8634

268650

(APB2) PTZ00429
0.8569

10002

Solute_trans_a superfamily
0.8557

25526

hypothetical protein
0.8534

9166

hypothetical protein
0.8519

6957

hypothetical protein
0.8471

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GIY-YIG_SLX1 Catalytic GIY-YIG domain of yeast structure-specific endonuclease subunit SLX1 and its eukaryotic... cl15257 142.757 4.77E-40 404 - 479 specific 198402
GIY-YIG_SF superfamily GIY-YIG nuclease domain superfamily; The GIY-YIG nuclease domain superfamily includes a large and... - 142.757 4.77E-40 404 - 479 superfamily 265657

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 251731 169012 458995 Cre07.g351500.t1.1 AT2G30350.2 509109

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004518 GO:0005622 GO:0006281 -

GO:0004518

nuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006281

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

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