22767 TM_PBP1_branched-chain-AA_like superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22767 chr_5 TM_PBP1_branched-chain-AA_like superfamily 1326079 1328966 - TM_PBP1_branched-chain-AA_like superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7450093 Thaps22767.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0083

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0047
 0.45

Most Highly Correlated Transcripts

263997

(APA1) Adaptin_N
0.9026

bd758

(bd758) NA
0.8994

bd439

(bd439) POLBc_alpha
0.8869

23247

choice_anch_B
0.8781

263994

Adaptin_N
0.8631

bd1983

(bd1983) RecA-like_NTPases superfamily
0.8622

23191

hypothetical protein
0.8574

3688

hypothetical protein
0.8562

bd211

(bd211) Maf_Ham1 superfamily
0.8518

269540

(CHC) Clathrin
0.8467

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TM_PBP1_branched-chain-AA_like superfamily Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC... - 141.279 9.17E-36 255 - 544 superfamily 260432

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006814 GO:0006885 GO:0015385 GO:0016021 -

GO:0006814

sodium ion transport

Details: 
The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0006885

regulation of pH

Details: 
Any process involved in the maintenance of an internal equilibrium of hydrogen ions, thereby modulating the internal pH, within an organism or cell.
GO Category: 
BP

GO:0015385

sodium:hydrogen antiporter activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out).
GO Category: 
MF

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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