261678 CYCc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261678 chr_3 CYCc 344018 346691 + CYCc

Synonyms

NCBI ID Ensembl Genomes exon ID
7444009 Thaps261678.1, Thaps261678.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0474

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0095
 0.37

Most Highly Correlated Transcripts

263599

COG3899
0.8894

263610

COG3899
0.8848

25879

TopA
0.8832

21538

PLN02666
0.8681

24852

hypothetical protein
0.8601

5660

hypothetical protein
0.8597

20989

hypothetical protein
0.8582

8979

hypothetical protein
0.8551

264261

COG3899
0.8539

21549

hypothetical protein
0.8536

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CHD cyclase homology domain; Catalytic domains of the mononucleotidyl cyclases (MNC's), also... cl11967 188.172 4.53E-55 636 - 819 specific 143636
Nucleotidyl_cyc_III superfamily Class III nucleotidyl cyclases; Class III nucleotidyl cyclases are the largest, most diverse group... - 188.172 4.53E-55 636 - 819 superfamily 264492
CHASE superfamily CHASE domain; This domain is found in the extracellular portion of receptor-like proteins - such as... - 64.0796 2.91E-11 360 - 575 superfamily 260903
CYCc Adenylyl- / guanylyl cyclase, catalytic domain; Present in two copies in mammalian adenylyl... - 194.398 4.21E-57 604 - 792 multi-dom 214485

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre02.g085100.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0007242 GO:0009190 GO:0016849 -

GO:0007242

NA

Details: 
NA
GO Category: 
NA

GO:0009190

cyclic nucleotide biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue.
GO Category: 
BP

GO:0016849

phosphorus-oxygen lyase activity

Details: 
Catalysis of the cleavage of a phosphorus-oxygen bond by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond.
GO Category: 
MF

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