262474 PRK11823
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
262474 chr_5 PRK11823 748355 750603 + PRK11823
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0243
PLN02948
0.889
Amidase superfamily
0.8885
WD40
0.8784
WD40
0.8761
HCO3_cotransp superfamily
0.8748
SWIRM
0.87
PKc_like superfamily
0.8666
PKc_like superfamily
0.8591
IBR
0.858
hypothetical protein
0.8543
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RecA-like_NTPases superfamily RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and... - 412.02 7.64E-139 186 - 567 superfamily 266574
ChlI superfamily Subunit ChlI of Mg-chelatase; Subunit ChlI of Mg-chelatase. - 60.122 5.50E-11 557 - 611 superfamily 257860
PRK11823 DNA repair protein RadA; Provisional - 547.385 0 182 - 611 multi-dom 236994
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11236 PHATRDRAFT_11236 148580 196787 Not available Cre07.g317908.t1.2 AT5G50340.1 450421
KEGG description KEGG Pathway
Not available Not available
GO:0004176 GO:0004252 GO:0006508 GO:0000166 GO:0017111 GO:0003684 GO:0005524 GO:0006281 -

ATP-dependent peptidase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the hydrolysis of peptide bonds.
GO Category: 
MF

serine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

damaged DNA binding

Details: 
Interacting selectively and non-covalently with damaged DNA.
GO Category: 
MF

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP
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