263687 (PSB_2) Ntn_hydrolase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263687 chr_10 (PSB_2) Ntn_hydrolase superfamily 664489 665757 - Ntn_hydrolase superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0275

Most Highly Correlated Transcripts

4108

hypothetical protein
0.932

6028

NA
0.9246

bd624

(bd624) Glyco_transf_34 superfamily
0.9238

bd1465

(bd1465) PKc_like superfamily
0.9234

261126

DadA
0.9124

21455

hypothetical protein
0.8995

40995

phr2
0.8983

267979

HCO3_cotransp superfamily
0.8977

13393

PLN02321
0.8943

14924

Lung_7-TM_R superfamily
0.8941

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ntn_hydrolase superfamily The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are... - 199.793 1.01E-62 89 - 302 superfamily 260443
PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover,... - 94.672 4.94E-23 89 - 300 multi-dom 223711

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14449 PHATRDRAFT_14449 190590 204711 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0004298 GO:0005839 GO:0006511 GO:0004299 -

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0005839

proteasome core complex

Details: 
A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
GO Category: 
CC

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

GO:0004299

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments