264921 (lhcx1) Chloroa_b-bindThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
264921	chr_23	(lhcx1) Chloroa_b-bind	365602	366466	-	Chloroa_b-bind

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442679	Thaps264921.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0017

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0214	0.34	0.0013 2.6

Most Highly Correlated Transcripts

38879 (Lhcx2) Chloroa_b-bind 0.93	20928 hypothetical protein 0.862	bd1267 (bd1267) rpoB 0.8394	bd837 (bd837) NA 0.8201	bd1023 (bd1023) atpD 0.8155	bd2028 (bd2028) NA 0.8146
8670 hypothetical protein 0.8125	270378 hypothetical protein 0.8013	6524 phytoene_desat 0.8002	bd598 (bd598) atpG 0.7982

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Chloroa_b-bind		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	cl02879	59.2426	2.31E-11	69 - 164	specific	249913
Chloroa_b-bind superfamily		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	-	59.2426	2.31E-11	69 - 164	superfamily	261492
Chloroa_b-bind		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	cl02879	59.2426	2.31E-11	69 - 164	specific	249913
Chloroa_b-bind superfamily		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	-	59.2426	2.31E-11	69 - 164	superfamily	261492

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	264022	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0009765 GO:0016020 -

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