268541 (UBA1) Ube1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268541 chr_3 (UBA1) Ube1 1854422 1857741 + Ube1

Synonyms

NCBI ID Ensembl Genomes exon ID
7445345 Thaps268541.3, Thaps268541.2, Thaps268541.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0208

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0238
 0.33

Most Highly Correlated Transcripts

bd1893

(bd1893) NA
0.9068

9947

hypothetical protein
0.8993

270222

0.8974

5638

hypothetical protein
0.8921

262575

DHOD_1A_like
0.889

23616

Peptidase_A22B superfamily
0.8848

7506

Uba3_RUB
0.8823

bd1078

(bd1078) NA
0.8795

bd687

(bd687) NA
0.8742

8303

Glyco_trans_1_2
0.8734

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present... cl17196 682.863 0 415 - 966 specific 238767
E1_enzyme_family superfamily Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes... - 269.522 3.28E-82 1 - 380 superfamily 266547
E1_enzyme_family superfamily Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes... - 269.522 3.28E-82 1 - 380 superfamily 266547
Ube1 ubiquitin-activating enzyme E1; This model represents the full length, over a thousand amino acids... - 1054.1 0 1 - 1015 multi-dom 130475

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54754 PHATRDRAFT_54754 205276 318409 467973 Cre09.g386400.t1.2 AT2G30110.1 344455

KEGG

KEGG description KEGG Pathway
Ubiquitin mediated proteolysis map04120

GO Terms

GO:0004839 GO:0006464 GO:0006512 GO:0003824 GO:0004842 -

GO:0004839

ubiquitin activating enzyme activity

Details: 
Catalysis of the reaction: a protein L-lysine + a ubiquitin + ATP = a protein-N-ubiquityl-lysine + AMP + diphosphate. This reaction is the activation of the C-terminal carboxyl group of ubiquitin by the formation of a high-energy thiolester bond in an ATP-dependent manner.
GO Category: 
MF

GO:0006464

cellular protein modification process

Details: 
The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
GO Category: 
BP

GO:0006512

NA

Details: 
NA
GO Category: 
NA

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

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