268823 Aa_trans superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268823 chr_5 Aa_trans superfamily 249078 250875 - Aa_trans superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448473 Thaps268823.2, Thaps268823.1, Thaps268823.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0130

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0152
 0.38

Most Highly Correlated Transcripts

3456

Peptidase_S41_CPP
0.8648

20619

hypothetical protein
0.8633

39767

TLP_HIUase
0.8601

5388

hypothetical protein
0.8588

32139

hypothetical protein
0.8581

12021

hypothetical protein
0.8566

13021

metallo-dependent_hydrolases superfamily
0.8564

20622

PRK11728 superfamily
0.8514

20633

Aa_trans superfamily
0.8502

1382

GAT_1 superfamily
0.8471

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Aa_trans superfamily Transmembrane amino acid transporter protein; This transmembrane region is found in many amino acid... - 148.6 6.12E-40 4 - 389 superfamily 266708

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45824 PHATRDRAFT_45824 209332 214021 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005279 GO:0006865 GO:0016020 -

GO:0005279

NA

Details: 
NA
GO Category: 
NA

GO:0006865

amino acid transport

Details: 
The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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