30075 (PSA5) proteasome_alpha_type_5
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
30075 chr_14 (PSA5) proteasome_alpha_type_5 784683 785927 + proteasome_alpha_type_5

Synonyms

NCBI ID Ensembl Genomes exon ID
7441815 Thaps30075.2, Thaps30075.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0199

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0054
 0.44

Most Highly Correlated Transcripts

270222

0.9656

26868

(PSA3) proteasome_alpha_type_3
0.9101

40962

(RPN8) PLN03246
0.9074

26991

GRX_GRXh_1_2_like
0.8935

262525

(PSB5) proteasome_beta_type_5
0.884

32037

(RPT6) RPT1
0.862

264377

(PSB7) proteasome_beta_type_7
0.8619

516

(RPT5) RPT1
0.8615

24318

(PSB_3) proteasome_beta_type_4
0.8613

26706

(PSA7) proteasome_alpha_type_7
0.858

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central... cl00467 379.374 4.79E-134 8 - 223 specific 239722
Ntn_hydrolase superfamily The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are... - 379.374 4.79E-134 8 - 223 superfamily 260443
PRK03996 proteasome subunit alpha; Provisional - 290.967 8.41E-99 8 - 244 multi-dom 235192

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_28202 PHATR_28202 265669 208517 Not available Cre17.g724350.t1.2 AT3G14290.1 354158

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0004175 GO:0005839 GO:0006511 GO:0004298 GO:0004299 -

GO:0004175

endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
GO Category: 
MF

GO:0005839

proteasome core complex

Details: 
A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
GO Category: 
CC

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004299

NA

Details: 
NA
GO Category: 
NA

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