32037 (RPT6) RPT1
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
32037 chr_2 (RPT6) RPT1 279045 280259 + RPT1
NCBI ID Ensembl Genomes exon ID
7452191 Thaps32037.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0199
Normalized Mean Residue
Thaps_bicluster_0098
0.36
(PSB5) proteasome_beta_type_5
0.9168
(RPN9) PCI
0.9147
(bd393) nst superfamily
0.9042
(PSA3) proteasome_alpha_type_3
0.8952
(PSA6) proteasome_alpha_type_6
0.8865
TIM_phosphate_binding superfamily
0.8815
(Tp_CCHH26) regulator [Rayko]
0.8774
(RPT2) PTZ00361
0.8663
GRX_GRXh_1_2_like
0.8649
(PSA5) proteasome_alpha_type_5
0.862
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 108.387 3.02E-28 152 - 316 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 108.387 3.02E-28 152 - 316 superfamily 267297
RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover,... - 576.524 0 21 - 402 multi-dom 224143
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_30067 PHATRDRAFT_30067 272982 195799 456589 Cre04.g216600.t1.2 AT5G19990.1 546373
KEGG description KEGG Pathway
Proteasome map03050
GO:0005524 GO:0006139 GO:0019201 GO:0000166 GO:0017111 GO:0005634 GO:0005737 GO:0016787 GO:0030163 GO:0004298 GO:0004299 -

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

nucleobase-containing compound metabolic process

Details: 
Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GO Category: 
BP

nucleotide kinase activity

Details: 
Catalysis of the reaction: ATP + nucleoside monophosphate = ADP + nucleoside diphosphate.
GO Category: 
MF

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

hydrolase activity

Details: 
Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO Category: 
MF

protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
GO Category: 
BP

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

NA

Details: 
NA
GO Category: 
NA
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