30683 proteasome_alpha_type_2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
30683 chr_22 proteasome_alpha_type_2 535702 536979 + proteasome_alpha_type_2

Synonyms

NCBI ID Ensembl Genomes exon ID
7443893 Thaps30683.2, Thaps30683.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0437

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0087
 0.32

Most Highly Correlated Transcripts

11068

(PSA6) proteasome_alpha_type_6
0.885

37118

FeThRed_B
0.8786

bd663

(bd663) NA
0.8633

16114

PLN02350
0.8594

264377

(PSB7) proteasome_beta_type_7
0.8456

13448

Sec1
0.8431

23050

hypothetical protein
0.8381

34672

Sm_E
0.8361

26706

(PSA7) proteasome_alpha_type_7
0.8352

26398

Peptidase_C12_UCH37_BAP1
0.8352

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central... cl00467 386.292 1.15E-136 6 - 234 specific 239719
Ntn_hydrolase superfamily The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are... - 386.292 1.15E-136 6 - 234 superfamily 260443
PRK03996 proteasome subunit alpha; Provisional - 240.121 4.51E-79 11 - 236 multi-dom 235192

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49897 PHATRDRAFT_49897 263180 228240 462164 Cre08.g373250.t1.2 AT1G16470.2 354471

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0004298 GO:0005839 GO:0006511 GO:0004299 -

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0005839

proteasome core complex

Details: 
A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
GO Category: 
CC

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

GO:0004299

NA

Details: 
NA
GO Category: 
NA

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