32477 (ODC1) PLPDE_III_ODC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32477 chr_2 (ODC1) PLPDE_III_ODC 2539429 2541953 + PLPDE_III_ODC

Synonyms

NCBI ID Ensembl Genomes exon ID
7450490 Thaps32477.2, Thaps32477.1, Thaps32477.3, Thaps32477.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0241

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0083
 0.43

Most Highly Correlated Transcripts

bd794

(bd794) NA
0.9329

bd1290

(bd1290) atpH
0.9323

bd1378

(bd1378) atpI
0.9301

bd467

(bd467) Cytochrome_b_N
0.9291

bd2088

(bd2088) rbcL
0.9271

bd598

(bd598) atpG
0.9241

bd1318

(bd1318) atpF
0.919

bd1092

(bd1092) NA
0.9169

bd1023

(bd1023) atpD
0.9164

bd668

(bd668) NA
0.914

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase; This subfamily is... cl00261 487.002 2.41E-169 128 - 514 specific 143482
PLPDE_III superfamily Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes; The fold type III PLP-dependent enzyme... - 487.002 2.41E-169 128 - 514 superfamily 260308
LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism] - 268.761 4.16E-84 127 - 507 multi-dom 223098

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12642 PHATRDRAFT_12642 174417 251641 435210 Cre16.g683371.t1.1 Not available 474019

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0003824 GO:0006596 GO:0004586 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0006596

polyamine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups.
GO Category: 
BP

GO:0004586

ornithine decarboxylase activity

Details: 
Catalysis of the reaction: L-ornithine + H(+) = CO(2) + putrescine.
GO Category: 
MF

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