35499 Smc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35499 chr_7 Smc 779852 784288 - Smc

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0163

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0033
 0.48

Most Highly Correlated Transcripts

263997

(APA1) Adaptin_N
0.8835

bd529

(bd529) SNF2_N
0.868

bd951

(bd951) NA
0.8652

2653

CH
0.864

bd392

(bd392) DEXDc
0.8612

7217

hypothetical protein
0.85

bd439

(bd439) POLBc_alpha
0.8483

bd446

(bd446) HrpA
0.8471

9024

hypothetical protein
0.8462

9393

hypothetical protein
0.8435

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_SMC1_euk ATP-binding cassette domain of eukaryotic SMC1 proteins; The structural maintenance of chromosomes... cl17201 203.188 1.65E-58 1134 - 1236 specific 213242
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 203.188 1.65E-58 1134 - 1236 superfamily 266551
ABC_SMC1_euk ATP-binding cassette domain of eukaryotic SMC1 proteins; The structural maintenance of chromosomes... cl17201 203.188 1.65E-58 1134 - 1236 specific 213242
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 203.188 1.65E-58 1134 - 1236 superfamily 266551
SMC_hinge SMC proteins Flexible Hinge Domain; This entry represents the hinge region of the SMC (Structural... cl05797 126.577 2.74E-33 521 - 641 specific 214944
SMC_hinge superfamily SMC proteins Flexible Hinge Domain; This family represents the hinge region of the SMC (Structural... - 126.577 2.74E-33 521 - 641 superfamily 262671
Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] - 481.907 1.08E-148 10 - 1238 multi-dom 224117

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_25506 PHATRDRAFT_25506 212269 Not available 451041 Cre15.g635800.t1.1 AT3G54670.3 563203

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0005694 GO:0051276 GO:0016887 GO:0005515 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0005694

chromosome

Details: 
A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
GO Category: 
CC

GO:0051276

chromosome organization

Details: 
A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information.
GO Category: 
BP

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0005515

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
MF

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