35690 CysH
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
35690 chr_7 CysH 441861 443543 + CysH
NCBI ID Ensembl Genomes exon ID
7446213 Thaps35690.2, Thaps35690.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0204
Normalized Mean Residue
Thaps_bicluster_0013
0.47
COG3899
0.8816
Bac_rhamnosid superfamily
0.8766
hypothetical protein
0.8652
NAD_binding_8 superfamily
0.864
Bromodomain superfamily
0.8547
Gly_transf_sug
0.8508
ZntA
0.8341
CHD
0.8334
hypothetical protein
0.8327
Sec23_helical
0.8325
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS... cl00292 131.758 7.19E-36 166 - 345 specific 238846
AANH_like superfamily Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases... - 131.758 7.19E-36 166 - 345 superfamily 260331
PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic... cl00388 78.4213 1.80E-17 405 - 513 specific 239259
Thioredoxin_like superfamily Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; The thioredoxin (TRX... - 78.4213 1.80E-17 405 - 513 superfamily 260398
CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD... - 145.26 1.02E-39 122 - 384 multi-dom 223253
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available
KEGG description KEGG Pathway
Metabolic pathways map01100
GO:0003723 GO:0005525 GO:0005786 GO:0006614 GO:0008152 GO:0016740 GO:0004604 GO:0019379 -

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

signal recognition particle, endoplasmic reticulum targeting

Details: 
A ribonucleoprotein particle of 325 kDa composed of a 7S (300 nucleotide) RNA molecule and a complex of six different polypeptides. This binds both to the N-terminal signal peptide for proteins destined for the endoplasmic reticulum as they emerge from the large ribosomal subunit and also to the ribosome. This binding arrests further translation thereby preventing the proteins from being released into the cytosol. The SRP-ribosome complex then diffuses to the endoplasmic reticulum where it is bound to the signal recognition particle receptor, which allows resumption of protein synthesis and facilitates the passage of the growing polypeptide chain through the translocon. Through a process involving GTP hydrolysis, the SRP-SRP receptor complex dissociates and SRP returns to the cytosol. Of the six polypeptides of SRP the 54 kDa subunit (SRP54) is the central player. It contains an N-terminal GTPase domain and a C-terminal domain that binds directly to the signal peptide and the SRP RNA. Examples of this component are found in Mus musculus, Saccharomyces cerevisiae and Arabidopsis thaliana.
GO Category: 
CC

SRP-dependent cotranslational protein targeting to membrane

Details: 
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
GO Category: 
BP

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

transferase activity

Details: 
Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
GO Category: 
MF

phosphoadenylyl-sulfate reductase (thioredoxin) activity

Details: 
Catalysis of the reaction: adenosine 3',5'-diphosphate + H(+) + sulfite + thioredoxin disulfide = 3'-phospho-5'-adenylyl sulfate + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin; 3'-phosphoadenosine 5'-phosphosulfate is also known as PAPS.
GO Category: 
MF

sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)

Details: 
The pathway by which inorganic sulfate is processed and incorporated into sulfated compounds, where the phosphoadenylyl sulfate reduction step is catalyzed by the enzyme phosphoadenylyl-sulfate reductase (thioredoxin) (EC:1.8.4.8).
GO Category: 
BP
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