38363 MYSc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38363 chr_19c_29 MYSc 192637 196418 + MYSc

Synonyms

NCBI ID Ensembl Genomes exon ID
7444406 Thaps38363.2, Thaps38363.1, Thaps38363.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0268

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0061
 0.42

Most Highly Correlated Transcripts

262797

Sec7
0.9107

11371

hypothetical protein
0.898

261056

(APB3) Adaptin_N
0.8944

261392

NPR2 superfamily
0.8892

262617

(Tp_Myb2R7) MYB DNA binding protein/ transcription factor-like protein
0.8889

23130

NT_PAP_TUTase
0.8857

9270

hypothetical protein
0.8847

1268

hypothetical protein
0.8846

35129

(Tp_Myb2R9) PLN03142
0.8818

5694

hypothetical protein
0.8785

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger... cl00286 476.373 1.13E-152 132 - 863 specific 238071
Motor_domain superfamily Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the... - 476.373 1.13E-152 132 - 863 superfamily 260327

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003774 GO:0005524 GO:0016459 -

GO:0003774

motor activity

Details: 
Catalysis of movement along a polymeric molecule such as a microfilament or microtubule, coupled to the hydrolysis of a nucleoside triphosphate.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016459

myosin complex

Details: 
A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes.
GO Category: 
CC

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