39622 NACThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
39622	chr_2	NAC	1728469	1729161	+	NAC

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452437	Thaps39622.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0049

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0094	0.37	39 0.05

Most Highly Correlated Transcripts

38964 Chorismate_synthase 0.8973	269759 hypothetical protein 0.8886	5293 PRK00772 0.8832	268875 hypothetical protein 0.8781	bd756 (bd756) NA 0.869	262977 NA 0.8679
33046 PLN02265 0.8659	37539 cpn10 0.8641	268519 hypothetical protein 0.8619	39735 (RL27A) Ribosomal_L18e superfamily 0.8602

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
NAC superfamily		NAC domain; NAC domain.	-	65.5964	7.49E-15	57 - 106	superfamily	202009
NAC superfamily		NAC domain; NAC domain.	-	65.5964	7.49E-15	57 - 106	superfamily	202009

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_48728	PHATRDRAFT_48728	224395	31666	421007	Cre15.g635600.t1.2	AT3G49470.1	284724

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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