12810 KAP95
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
12810 chr_4 KAP95 2082624 2085245 - KAP95

Synonyms

NCBI ID Ensembl Genomes exon ID
7451373 Thaps12810.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0316

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0096
 0.39

Most Highly Correlated Transcripts

8777

SPX
0.9129

1255

Nic96 superfamily
0.8893

5694

hypothetical protein
0.8822

262025

GH18_chitinase-like superfamily
0.8665

261056

(APB3) Adaptin_N
0.8662

34541

MgtA
0.8655

3149

Gst
0.8654

262797

Sec7
0.8601

11371

hypothetical protein
0.8601

262617

(Tp_Myb2R7) MYB DNA binding protein/ transcription factor-like protein
0.86

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] - 534.518 2.95E-176 15 - 871 multi-dom 227540

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
33348 PHATRDRAFT_29967 PHATRDRAFT_29967 207446 318226 419647 Cre01.g034000.t1.2 AT3G08947.1 344537

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0000059 GO:0005634 GO:0005643 GO:0005737 GO:0008565 -

GO:0000059

protein import into nucleus, docking

Details: 
A protein complex assembly process that contributes to protein import into the nucleus, and that results in the association of a cargo protein, a carrier protein such as an importin alpha/beta heterodimer, and a nucleoporin located at the periphery of the nuclear pore complex.
GO Category: 
BP

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0005643

nuclear pore

Details: 
Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
GO Category: 
CC

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0008565

protein transporter activity

Details: 
Enables the directed movement of proteins into, out of or within a cell, or between cells.
GO Category: 
MF

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