24073 BROMOThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
24073	chr_9	BROMO	1053115	1059778	-	BROMO

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450995	Thaps24073.4, Thaps24073.2, Thaps24073.3, Thaps24073.5, Thaps24073.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0261

Most Highly Correlated Transcripts

263997 (APA1) Adaptin_N 0.887	26140 PRP8 0.8821	24688 hypothetical protein 0.8772	bd894 (bd894) Peptidase_M14_like superfamily 0.8759	23979 zf-HC5HC2H superfamily 0.8753	11261 WD40 superfamily 0.8744
269532 meiotic check point regulator-like protein 0.8741	269534 (SUPT6H) SH2_2 0.874	40925 (RPB21) PRK08565 0.8717	25593 hypothetical protein 0.8711

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
BROMO		bromo domain; bromo domain.	cl02556	89.2601	2.80E-20	1491 - 1615	specific	197636
Bromodomain superfamily		Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone...	-	89.2601	2.80E-20	1491 - 1615	superfamily	261339

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_44609	PHATRDRAFT_44609	155225	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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