269534 (SUPT6H) SH2_2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269534 chr_10 (SUPT6H) SH2_2 979410 985474 + SH2_2

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0245

Most Highly Correlated Transcripts

bd1465

(bd1465) PKc_like superfamily
0.9126

8762

SNF2_N
0.9061

11261

WD40 superfamily
0.9061

25617

hypothetical protein
0.8977

263997

(APA1) Adaptin_N
0.8945

23582

hypothetical protein
0.8928

bd624

(bd624) Glyco_transf_34 superfamily
0.8904

5788

TFIIS_M
0.8897

24688

hypothetical protein
0.8875

14004

STKc_CDK9_like
0.8864

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SH2_Nterm_SPT6_like N-terminal Src homology 2 (SH2) domain found in Spt6; N-terminal SH2 domain in Spt6. Spt6 is an... cl15255 89.9894 1044 - 1131 specific 198174
SH2 superfamily Src homology 2 (SH2) domain; In general, SH2 domains are involved in signal transduction; they bind... - 78.8061 3.93E-17 1141 - 1227 superfamily 265655
SH2_Cterm_SPT6_like C-terminal Src homology 2 (SH2) domain found in Spt6; Spt6 is an essential transcription elongation... cl15255 78.8061 1141 - 1227 specific 198182
SH2 superfamily Src homology 2 (SH2) domain; In general, SH2 domains are involved in signal transduction; they bind... - 78.8061 3.93E-17 1141 - 1227 superfamily 265655
DLD superfamily Death-like domain of SPT6; This DLD domain maintains the characteristic overall topology of death... - 79.9728 811 - 925 superfamily 259015
ENDO3c superfamily - 62.5494 719 - 797 superfamily 267419
SH2_2 - 126.122 1008 - 1225 multi-dom 258771

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47879 PHATRDRAFT_47879 209780 319659 454389 Cre09.g403182.t1.1 AT1G65440.1 349766

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

Add comment

Log in to post comments