25879 TopA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25879 chr_23 TopA 423896 430141 + TopA

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0469

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0022
 0.44

Most Highly Correlated Transcripts

22908

hypothetical protein
0.8912

24852

hypothetical protein
0.8847

261678

CYCc
0.8832

9257

COG3899
0.8718

263610

COG3899
0.871

21593

Trichoplein
0.8681

4157

hypothetical protein
0.868

263599

COG3899
0.8658

23971

zf-UBR
0.8626

2666

hypothetical protein
0.8564

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TOP1Ac superfamily DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA... - 203.991 5.60E-57 782 - 1157 superfamily 238110
TOPRIM superfamily Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA,... - 96.5335 1.78E-22 661 - 777 superfamily 260587
TopA Topoisomerase IA [DNA replication, recombination, and repair] - 230.572 2.59E-64 664 - 1154 multi-dom 223624

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_8810 PHATRDRAFT_8810 Not available 239343 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Homologous recombination map03440

GO Terms

GO:0003677 GO:0003916 GO:0006268 GO:0003917 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003916

DNA topoisomerase activity

Details: 
Catalysis of the transient cleavage and passage of individual DNA strands or double helices through one another, resulting a topological transformation in double-stranded DNA.
GO Category: 
MF

GO:0006268

DNA unwinding involved in DNA replication

Details: 
The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating unpaired template strands for DNA replication.
GO Category: 
BP

GO:0003917

DNA topoisomerase type I activity

Details: 
Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle.
GO Category: 
MF

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