261692 SYLF_FYVE
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261692 chr_3 SYLF_FYVE 401977 403643 + SYLF_FYVE

Synonyms

NCBI ID Ensembl Genomes exon ID
7441760 Thaps261692.2, Thaps261692.3, Thaps261692.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0368

Most Highly Correlated Transcripts

8762

SNF2_N
0.8467

261357

NAD_binding_8 superfamily
0.8464

260936

HCO3_cotransp superfamily
0.838

263610

COG3899
0.8149

9650

hypothetical protein
0.8122

13427

AarF
0.8115

31075

PDEase_I
0.811

263599

COG3899
0.8041

7975

eIF1_SUI1_like superfamily
0.8004

260787

hypothetical protein
0.8002

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SYLF_FYVE The SYLF domain (also called DUF500), a novel lipid-binding module, of FYVE zinc finger domain... cl01109 253.295 1.20E-81 244 - 466 specific 211402
SYLF superfamily The SYLF domain (also called DUF500), a novel lipid-binding module; The SYLF domain is named after... - 253.295 1.20E-81 244 - 466 superfamily 260792
FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with... cl17764 77.0909 1.16E-17 142 - 200 specific 238022
FYVE superfamily FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with... - 77.0909 1.16E-17 142 - 200 superfamily 266823

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd741 PHATRDRAFT_bd741 206917 255964 Not available Cre16.g668550.t1.2 AT3G43230.1 544695

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008270 -

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

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