270120 Uup
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
270120 chr_23 Uup 145771 148382 + Uup

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Most Highly Correlated Transcripts

5053

hypothetical protein
0.9383

23812

TrmA
0.9265

268136

COG1054
0.924

15114

Zinc_peptidase_like superfamily
0.9197

38472

HA2
0.9159

269925

AAA_12 superfamily
0.9155

267979

HCO3_cotransp superfamily
0.9143

36007

Aldolase_II superfamily
0.9129

5806

TIM_phosphate_binding superfamily
0.9122

30980

EngA2
0.912

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 145.284 7.26E-41 9 - 198 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 145.284 7.26E-41 9 - 198 superfamily 266551
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 145.284 7.26E-41 9 - 198 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 145.284 7.26E-41 9 - 198 superfamily 266551
ABC_tran_2 superfamily ABC transporter; This domain is related to pfam00005. - 96.4923 5.70E-24 192 - 282 superfamily 257346
ABC_tran_2 superfamily ABC transporter; This domain is related to pfam00005. - 96.4923 5.70E-24 192 - 282 superfamily 257346
Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction... - 534.137 0 2 - 503 multi-dom 223562

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_41659 PHATRDRAFT_41659 208417 160370 68429 Cre11.g467781.t1.1 AT5G60790.1 558930

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 GO:0004298 GO:0004299 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004299

NA

Details: 
NA
GO Category: 
NA

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