3582 Rab6
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3582 chr_3 Rab6 1300062 1304769 + Rab6

Synonyms

NCBI ID Ensembl Genomes exon ID
7441912 Thaps3582.1, Thaps3582.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0173

Most Highly Correlated Transcripts

29117

vATP-synt_E
0.9203

39299

(ARF3) Arf1_5_like
0.9183

bd807

(bd807) Cyt_b561_FRRS1_like
0.9151

24736

EHD
0.9074

268840

CBS_pair_10
0.9069

23399

PTZ00184
0.9059

22673

NA
0.9032

263742

Synaptobrevin
0.901

22842

hypothetical protein
0.9002

260829

GalK
0.8982

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Rab6 Rab GTPase family 6 (Rab6); Rab6 is involved in microtubule-dependent transport pathways through... cl17170 319.183 9.54E-112 30 - 191 specific 206654
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 319.183 9.54E-112 30 - 191 superfamily 266525

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_21535 PHATRDRAFT_21535 224174 301968 436478 Cre01.g047550.t1.2 AT5G10260.1 254677

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0007264 GO:0006886 GO:0015031 GO:0003924 GO:0003925 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

GO:0015031

protein transport

Details: 
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0003925

NA

Details: 
NA
GO Category: 
NA

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