38225 MPN_eIF3f
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38225 chr_19a_19 MPN_eIF3f 126091 127429 + MPN_eIF3f

Synonyms

NCBI ID Ensembl Genomes exon ID
7449882 Thaps38225.2, Thaps38225.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0231

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0211
 0.43

Most Highly Correlated Transcripts

267979

HCO3_cotransp superfamily
0.8839

27083

eIF3_N superfamily
0.8832

268443

SAICAR_synt_Sc
0.8731

20613

PLPDE_III_DapDC
0.8667

42621

HisS
0.8653

36007

Aldolase_II superfamily
0.862

22031

Sin_N superfamily
0.8565

12899

AAA
0.8542

38258

ATM1
0.8539

22465

PTZ00169
0.8528

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f;... cl13996 383.865 8.45E-134 40 - 315 specific 163695
MPN superfamily Mpr1p, Pad1p N-terminal (MPN) domains; MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains... - 383.865 8.45E-134 40 - 315 superfamily 265414

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11458 PHATRDRAFT_11458 271363 236568 107489 Cre16.g654500.t1.1 AT2G39990.1 355949

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0004298 GO:0004299 -

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004299

NA

Details: 
NA
GO Category: 
NA

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