4718 SDR_a5Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
4718	chr_4	SDR_a5	1735084	1736025	+	SDR_a5

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443742	Thaps4718.1, Thaps4718.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0024

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0102	0.20	3500 1.1

Most Highly Correlated Transcripts

32723 Chloroa_b-bind 0.9621	bd1645 (bd1645) tpt 0.9595	bd1160 (bd1160) Chloroa_b-bind superfamily 0.9534	5240 ALAD_PBGS_aspartate_rich 0.9533	575 PRK00062 0.9458	32201 Cob-chelat-sub 0.9439
2465 hypothetical protein 0.9426	270280 hypothetical protein 0.9423	bd1306 (bd1306) NA 0.9417	261232 URO-D 0.9401

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SDR_a5		atypical (a) SDRs, subgroup 5; This subgroup contains atypical SDRs, some of which are identified...	cl09931	161.635	1.84E-48	50 - 257	specific	187554
NADB_Rossmann superfamily		Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD...	-	161.635	1.84E-48	50 - 257	superfamily	263925

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_26382	PHATRDRAFT_26382	175784	317371	Not available	Cre06.g300700.t1.1	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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