9021 (PbgD) hemC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9021 chr_12 (PbgD) hemC 348673 349665 + hemC

Synonyms

NCBI ID Ensembl Genomes exon ID
7445795 Thaps9021.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0024

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0260
 0.25

Most Highly Correlated Transcripts

261232

URO-D
0.9536

261608

PLN02585
0.9497

268480

(GGPS1) Trans_IPPS_HT
0.9485

5077

PLN00015
0.9454

575

PRK00062
0.9441

32201

Cob-chelat-sub
0.944

5240

ALAD_PBGS_aspartate_rich
0.9398

31012

(Cpx1) PLN02873
0.9324

263658

GUN4
0.9292

3326

TauD
0.9142

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMBS superfamily Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an... - 366.554 2.38E-126 10 - 306 superfamily 238276
hemC porphobilinogen deaminase; Reviewed - 412.154 2.46E-144 9 - 306 multi-dom 234612

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51811 PHATRDRAFT_51811 273393 298437 423968 Cre16.g663900.t1.2 AT5G08280.1 Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004418 GO:0006779 -

GO:0004418

hydroxymethylbilane synthase activity

Details: 
Catalysis of the reaction: H(2)O + 4 porphobilinogen = hydroxymethylbilane + 4 NH(4)(+).
GO Category: 
MF

GO:0006779

porphyrin-containing compound biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
GO Category: 
BP

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