9175 COG3899Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
9175	chr_12	COG3899	745729	749961	-	COG3899

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447589	Thaps9175.1, Thaps9175.2, Thaps9175.4, Thaps9175.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0306

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0093	0.41	0.084 1.8

Most Highly Correlated Transcripts

263610 COG3899 0.8604	4047 hypothetical protein 0.8572	3196 hypothetical protein 0.8531	263599 COG3899 0.8527	36301 HMG-box 0.8488	22355 hypothetical protein 0.8381
8762 SNF2_N 0.837	21538 PLN02666 0.8308	269496 (Tp_TAZ3_PHD1) KAT11 superfamily 0.8275	22277 RdRP 0.8231

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_16		AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	cl18944	82.5105	1.12E-17	315 - 511	specific	257559
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	82.5105	1.12E-17	315 - 511	superfamily	267297
COG3899		Predicted ATPase [General function prediction only]	-	222.659	3.68E-60	316 - 1099	multi-dom	226415

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	261238	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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