1870 COG3899Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
1870	chr_1	COG3899	2618371	2622850	+	COG3899

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445089	Thaps1870.5, Thaps1870.1, Thaps1870.3, Thaps1870.4, Thaps1870.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0073

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0006	0.41	0.00092 110

Most Highly Correlated Transcripts

bd1071 (bd1071) NA 0.8697	1869 hypothetical protein 0.8169	bd1435 (bd1435) ycf3 0.8143	bd573 (bd573) petA 0.8135	bd2088 (bd2088) rbcL 0.8034	bd2028 (bd2028) NA 0.8029
bd1243 (bd1243) rpl33 0.7976	bd794 (bd794) NA 0.7936	bd1039 (bd1039) psbV 0.7924	bd529 (bd529) SNF2_N 0.7892

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_16		AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	cl18944	67.1025	1.32E-12	332 - 510	specific	257559
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	67.1025	1.32E-12	332 - 510	superfamily	267297
COG3899		Predicted ATPase [General function prediction only]	-	193.769	5.68E-51	332 - 1183	multi-dom	226415

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments