22650 17beta-HSD1_like_SDR_c
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22650 chr_5 17beta-HSD1_like_SDR_c 690158 691623 + 17beta-HSD1_like_SDR_c

Synonyms

NCBI ID Ensembl Genomes exon ID
7451797 Thaps22650.3, Thaps22650.2, Thaps22650.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0017

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0104
 0.31

Most Highly Correlated Transcripts

268474

PLN02657
0.9132

5077

PLN00015
0.9132

38306

Chloroa_b-bind
0.9066

261608

PLN02585
0.9007

11086

hypothetical protein
0.8996

31012

(Cpx1) PLN02873
0.8975

33566

(TPP1) sigpep_I_bact
0.8971

270378

hypothetical protein
0.893

3186

hypothetical protein
0.8915

3326

TauD
0.8914

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
17beta-HSD1_like_SDR_c 17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c)... cl09931 296.052 1.19E-99 55 - 296 specific 187614
NADB_Rossmann superfamily Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD... - 296.052 1.19E-99 55 - 296 superfamily 263925
DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] - 173.202 1.20E-51 55 - 299 multi-dom 223377

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_25360 PHATRDRAFT_25360 208887 64411 414681 Not available AT1G67730.1 286458

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004812 GO:0005524 GO:0006418 GO:0008152 GO:0016491 GO:0000252 GO:0000253 GO:0004448 GO:0004495 GO:0008875 GO:0016229 GO:0016616 GO:0018451 GO:0018452 GO:0018453 GO:0048258 -

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0000252

C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity

Details: 
Catalysis of the reaction: 3-beta-hydroxy-4-beta-methyl-5-alpha-cholesta-8,24-dien-4-alpha-carboxylate + NAD(P)+ = 4-alpha-methyl-5-alpha-cholesta-8,24-dien-3-one + CO2 + NAD(P)H.
GO Category: 
MF

GO:0000253

3-keto sterol reductase activity

Details: 
Catalysis of the reaction: a 3-beta-hydroxyl sterol + NADP+ = a 3-keto sterol + NADPH + H(+).
GO Category: 
MF

GO:0004448

isocitrate dehydrogenase activity

Details: 
Catalysis of the reaction: isocitrate + acceptor = 2-oxoglutarate + CO2 + reduced acceptor.
GO Category: 
MF

GO:0004495

mevaldate reductase activity

Details: 
Catalysis of the reaction: (R)-mevalonate + acceptor = mevaldate + reduced acceptor.
GO Category: 
MF

GO:0008875

gluconate dehydrogenase activity

Details: 
Catalysis of the reaction: D-gluconate + NADP+ = dehydro-D-gluconate + NADPH + H+.
GO Category: 
MF

GO:0016229

steroid dehydrogenase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which one substrate is a sterol derivative.
GO Category: 
MF

GO:0016616

oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
GO Category: 
MF

GO:0018451

epoxide dehydrogenase activity

Details: 
Catalysis of the reaction: ethene oxide + NAD+ + CoA-SH = NADH + H+ + acetyl-CoA.
GO Category: 
MF

GO:0018452

5-exo-hydroxycamphor dehydrogenase activity

Details: 
Catalysis of the reaction: 5-exo-hydroxycamphor + NAD+ = NADH + H+ + 2,5-diketocamphane.
GO Category: 
MF

GO:0018453

2-hydroxytetrahydrofuran dehydrogenase activity

Details: 
Catalysis of the reaction: 2-hydroxytetrahydrofuran = 2 H+ + 2 e- + butyrolactone.
GO Category: 
MF

GO:0048258

3-ketoglucose-reductase activity

Details: 
Catalysis of the reaction: NADP+ + 3-dehydro-alpha-D-glucose = NADPH + alpha-D-glucose.
GO Category: 
MF

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