262325 SpoU_methylase
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262325 chr_4 SpoU_methylase 2138896 2140387 - SpoU_methylase

Synonyms

NCBI ID Ensembl Genomes exon ID
7451384 Thaps262325.1, Thaps262325.2, Thaps262325.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0226
 0.29

Most Highly Correlated Transcripts

bd1709

(bd1709) NA
0.9534

24439

hypothetical protein
0.9406

bd1667

(bd1667) Mpp10
0.933

268880

WD40 superfamily
0.9289

34413

RRM_ABT1_like
0.9253

2921

RRM_SF
0.9252

262041

MIF4G
0.9248

31415

hypothetical protein
0.9242

1374

RRM
0.9235

9118

MoaC_PE
0.9234

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SpoU_methylase SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. cl17307 109.906 8.59E-29 137 - 274 specific 249983
SpoU_methylase superfamily SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. - 109.906 8.59E-29 137 - 274 superfamily 266618

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48958 PHATRDRAFT_48958 195873 207974 235879 Cre09.g392950.t1.2 AT5G15390.1 264669

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0008173 GO:0009020 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0008173

RNA methyltransferase activity

Details: 
Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.
GO Category: 
MF

GO:0009020

tRNA (guanosine-2'-O-)-methyltransferase activity

Details: 
Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing 2'-O-methylguanosine.
GO Category: 
MF

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