269030 UTP15_C
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269030 chr_6 UTP15_C 482307 484669 + UTP15_C

Synonyms

NCBI ID Ensembl Genomes exon ID
7448560 Thaps269030.3, Thaps269030.2, Thaps269030.1, Thaps269030.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0227

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0191
 0.44

Most Highly Correlated Transcripts

4372

hypothetical protein
0.9143

42152

WD40
0.9134

267979

HCO3_cotransp superfamily
0.9118

23534

hypothetical protein
0.9094

13308

PLN02948
0.9067

8270

ANK
0.9039

22965

SrmB
0.9037

23210

hypothetical protein
0.8996

35224

Aldo_ket_red
0.898

23242

PRK00142
0.8912

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
UTP15_C superfamily UTP15 C terminal; U3 snoRNA is ubiquitous in eukaryotes and is required for nucleolar processing of... - 158.847 1.48E-45 503 - 648 superfamily 255334
UTP15_C superfamily UTP15 C terminal; U3 snoRNA is ubiquitous in eukaryotes and is required for nucleolar processing of... - 158.847 1.48E-45 503 - 648 superfamily 255334
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 112.043 2.44E-27 185 - 465 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 76.6659 4.50E-15 195 - 417 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43713 PHATRDRAFT_43713 224661 55557 204380 Cre03.g196850.t1.2 AT2G47990.1 356172

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

Not available -

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