270013 DNA_pol_A_plastid_likeThalassiosira pseudonana

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
270013	chr_20	DNA_pol_A_plastid_like	82022	85632	+	DNA_pol_A_plastid_like

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448484	Thaps270013.1, Thaps270013.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0238

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0042	0.43

Most Highly Correlated Transcripts

267979 HCO3_cotransp superfamily 0.9069	268443 SAICAR_synt_Sc 0.9005	13308 PLN02948 0.8954	5332 hypothetical protein 0.8909	24218 hypothetical protein 0.8908	5806 TIM_phosphate_binding superfamily 0.8863
40200 TRX_reduct 0.8855	4372 hypothetical protein 0.8825	22627 hypothetical protein 0.8815	264548 FusA 0.8765

Conserved Domains

Name	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DNA_pol_A_plastid_like	DNA polymerase A type from plastids of higher plants possibly involve in DNA replication or in the...	cl02626	633.665	0	645 - 1019	specific	176477
DNA_pol_A superfamily	Family A polymerase primarily fills DNA gaps that arise during DNA repair, recombination and...	-	633.665	0	645 - 1019	superfamily	261379
DNA_polA_I_Ecoli_like_exo	DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar...	cl10012	138.037	1.28E-36	306 - 525	specific	176651
DnaQ_like_exo superfamily	DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; The DnaQ-like...	-	138.037	1.28E-36	306 - 525	superfamily	263941
PolA	DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication,...	-	296.482	3.46E-88	283 - 1021	multi-dom	223820

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_51407	PHATRDRAFT_51407	199589	249814	208668	Cre08.g363837.t1.1	AT1G50840.1	284102

KEGG

KEGG description	KEGG Pathway
Homologous recombination	map03440

GO Terms

GO:0003677 GO:0003887 GO:0006260 GO:0003676 GO:0005622 GO:0008408 GO:0003889 GO:0003890 GO:0003891 GO:0003893 GO:0003894 GO:0003895 GO:0015999 GO:0016000 GO:0016448 GO:0016449 GO:0016450 GO:0016451 GO:0016452 GO:0019984 -

GO:0003677

DNA binding

Details:

Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

GO Category:

GO:0003887

DNA-directed DNA polymerase activity

Details:

Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer.

GO Category:

The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.

GO Category:

GO:0003676

nucleic acid binding

Details:

Interacting selectively and non-covalently with any nucleic acid.

GO Category:

GO:0005622

intracellular

Details:

The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

GO Category:

GO:0008408

3'-5' exonuclease activity

Details:

Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.

GO Category:

270013 DNA_pol_A_plastid_like
Thalassiosira pseudonana

Genome Browser

Summary

Synonyms

Hierarchical Clustering

Motif-Guided Biclusters

Most Highly Correlated Transcripts

Conserved Domains

Homologs in Other Species

KEGG

GO Terms

GO:0003677

GO:0003887

GO:0006260

GO:0003676

GO:0005622

GO:0008408

GO:0003889

GO:0003890

GO:0003891

GO:0003893

GO:0003894

GO:0003895

GO:0015999

GO:0016000

GO:0016448

GO:0016449

GO:0016450

GO:0016451

GO:0016452

GO:0019984

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