2999 PIN_SF superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2999 chr_2 PIN_SF superfamily 2460055 2462074 - PIN_SF superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7450479 Thaps2999.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0270

Most Highly Correlated Transcripts

12836

EEP superfamily
0.9134

263610

COG3899
0.8755

6459

Spc97_Spc98
0.8704

263997

(APA1) Adaptin_N
0.8639

23989

Exo70 superfamily
0.8607

23979

zf-HC5HC2H superfamily
0.8567

263072

PcnB
0.8544

21537

hypothetical protein
0.8537

8507

hypothetical protein
0.853

263599

COG3899
0.8501

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PIN_SF superfamily PIN (PilT N terminus) domain: Superfamily; PIN_SF The PIN (PilT N terminus) domain belongs to a... - 90.6332 1.25E-20 176 - 347 superfamily 265458
XPG_I XPG I-region; XPG I-region. cl02627 80.2821 4.50E-18 304 - 400 specific 250189
XPG_I superfamily XPG I-region; XPG I-region. - 80.2821 4.50E-18 304 - 400 superfamily 261380

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_46734 PHATR_46734 238418 291707 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0004518 GO:0006281 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0004518

nuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids.
GO Category: 
MF

GO:0006281

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

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