3054 COG0523
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3054 chr_2 COG0523 2638430 2640134 + COG0523

Synonyms

NCBI ID Ensembl Genomes exon ID
7442419 Thaps3054.3, Thaps3054.2, Thaps3054.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0359

Most Highly Correlated Transcripts

bd1267

(bd1267) rpoB
0.8167

bd1258

(bd1258) fer2
0.7966

bd1435

(bd1435) ycf3
0.7502

bd997

(bd997) rpoC1
0.729

bd2063

(bd2063) NA
0.7216

bd1251

(bd1251) rps18
0.7203

bd2050

(bd2050) rpoC2
0.7134

bd93

(bd93) NA
0.6732

bd1563

(bd1563) atpB
0.6711

bd573

(bd573) petA
0.6583

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Fer4_NifH superfamily The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain.... - 226.368 1.92E-71 115 - 276 superfamily 266552
CobW_C Cobalamin synthesis protein cobW C-terminal domain; This is a large and diverse family of putative... cl08458 86.1364 2.25E-20 342 - 439 specific 254355
CobW_C superfamily Cobalamin synthesis protein cobW C-terminal domain; This is a large and diverse family of putative... - 86.1364 2.25E-20 342 - 439 superfamily 263667
COG0523 Putative GTPases (G3E family) [General function prediction only] - 310.766 9.51E-102 114 - 441 multi-dom 223597

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_41508 PHATRDRAFT_41508 224667 221798 419514 Not available Not available 248037

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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