33039 SpoT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33039 chr_3 SpoT 2057617 2060383 - SpoT

Synonyms

NCBI ID Ensembl Genomes exon ID
7452090 Thaps33039.2, Thaps33039.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0474

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0095
 0.37

Most Highly Correlated Transcripts

262797

Sec7
0.9022

261430

Aa_trans superfamily
0.8956

263978

(Tp_HSF_4.2b) HSF_DNA-bind
0.8949

264262

COG3899
0.8922

10873

NA
0.8861

32217

MA3
0.8844

7299

hypothetical protein
0.883

9866

hypothetical protein
0.8829

263403

YafJ
0.8823

24943

COG3899
0.8805

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; This... cl11966 107.048 9.68E-27 281 - 397 specific 143389
Rel-Spo_like superfamily RelA- and SpoT-like ppGpp Synthetases and Hydrolases, catalytic domain; The Rel-Spo superfamily... - 107.048 9.68E-27 281 - 397 superfamily 264491
TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a... cl15768 89.8762 1.86E-21 451 - 510 specific 133438
TGS superfamily The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is... - 89.8762 1.86E-21 451 - 510 superfamily 265779
ACT_4 ACT domain; ACT domains bind to amino acids and regulate associated enzyme domains. These ACT... cl09141 60.6266 3.83E-11 811 - 885 specific 257632
ACT superfamily ACT domains are commonly involved in specifically binding an amino acid or other small ligand... - 60.6266 3.83E-11 811 - 885 superfamily 263730
SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms /... - 602.318 0 37 - 885 multi-dom 223394

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11099 PHATRDRAFT_11099 201593 195742 457699 Cre03.g159800.t1.1 AT4G02260.3 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0015969 GO:0008728 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0015969

guanosine tetraphosphate metabolic process

Details: 
The chemical reactions and pathways involving guanine tetraphosphate (5'-ppGpp-3'), a derivative of guanine riboside with four phosphates.
GO Category: 
BP

GO:0008728

GTP diphosphokinase activity

Details: 
Catalysis of the reaction: ATP + GTP = AMP + guanosine 3'-diphosphate 5'-triphosphate.
GO Category: 
MF

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