35711 GH16_laminarinase_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35711 chr_7 GH16_laminarinase_like 538394 540206 + GH16_laminarinase_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7446233 Thaps35711.4, Thaps35711.1, Thaps35711.3, Thaps35711.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0299

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0026
 0.39

Most Highly Correlated Transcripts

plastid_psb28

0.6887

10063

Pep_deformylase superfamily
0.6851

bd308

(bd308) psaE
0.6823

bd1339

(bd1339) psaD
0.6814

bd1911

(bd1911) Ribosomal_L1
0.6341

264090

AAA_12
0.6047

bd1048

(bd1048) PS_I_psaC
0.5997

24545

hypothetical protein
0.5995

7453

SpoU_methylase superfamily
0.5937

bd1426

(bd1426) psbZ
0.5878

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16; Laminarinase, also known as glucan endo-1... cl00218 308.014 1.78E-101 103 - 341 specific 185693
Glyco_hydrolase_16 superfamily glycosyl hydrolase family 16; The O-Glycosyl hydrolases are a widespread group of enzymes that... - 308.014 1.78E-101 103 - 341 superfamily 260271
SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] - 143.378 3.13E-38 103 - 403 multi-dom 225182

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54681 PHATRDRAFT_54681 Not available 41534 242428 Cre03.g173100.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004553 GO:0005975 -

GO:0004553

hydrolase activity, hydrolyzing O-glycosyl compounds

Details: 
Catalysis of the hydrolysis of any O-glycosyl bond.
GO Category: 
MF

GO:0005975

carbohydrate metabolic process

Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO Category: 
BP

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