42447 RRM_SF superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42447 chr_14 RRM_SF superfamily 774273 775100 - RRM_SF superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7451569 Thaps42447.3, Thaps42447.2, Thaps42447.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0493

Most Highly Correlated Transcripts

bd174

(bd174) Tim17 superfamily
0.8862

bd1125

(bd1125) LSm4
0.8144

33092

RINGv superfamily
0.809

22118

Pkinase
0.7996

262149

Cyt-b5
0.7943

37336

Beach
0.7894

263124

RRM_snRNP70
0.7859

23261

(Tp_fungal_TRF1a) regulator [Rayko]
0.7807

bd1939

(bd1939) NA
0.7767

34442

CAP_ED
0.7754

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 107.286 1.78E-30 27 - 98 superfamily 266524
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 78.8354 3.71E-18 20 - 173 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
11761 PHATR_21039 PHATR_21039 186321 153689 Not available Cre07.g330300.t1.2 AT4G14300.1 526739

KEGG

KEGG description KEGG Pathway
mRNA surveillance pathway map03015

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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