517 (PSA1) proteasome_alpha_type_1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
517 chr_6 (PSA1) proteasome_alpha_type_1 708902 710215 + proteasome_alpha_type_1

Synonyms

NCBI ID Ensembl Genomes exon ID
7448604 Thaps517.2, Thaps517.1, Thaps517.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0464

Most Highly Correlated Transcripts

bd899

(bd899) FIG superfamily
0.9068

261357

NAD_binding_8 superfamily
0.836

263599

COG3899
0.8212

912

hypothetical protein
0.8131

6062

hypothetical protein
0.8107

17468

CK_II_beta
0.81

30149

Solute_trans_a
0.8096

32525

UBCc
0.8053

19743

Sm_D3
0.8041

25653

hypothetical protein
0.8038

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central... cl00467 359.682 7.06E-126 6 - 216 specific 239718
Ntn_hydrolase superfamily The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are... - 359.682 7.06E-126 6 - 216 superfamily 260443
PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover,... - 195.979 2.53E-61 6 - 236 multi-dom 223711

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_27508 PHATRDRAFT_27508 206662 247793 118695 Cre06.g304300.t1.2 AT1G47250.1 541580

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0004175 GO:0005839 GO:0006511 GO:0004298 GO:0004299 -

GO:0004175

endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
GO Category: 
MF

GO:0005839

proteasome core complex

Details: 
A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
GO Category: 
CC

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004299

NA

Details: 
NA
GO Category: 
NA

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