Organism : Desulfovibrio vulgaris Hildenborough | Module List :
DVU2564 bioF
8-amino-7-oxononanoate synthase
Functional Annotations (7)
Function | System |
---|---|
7-keto-8-aminopelargonate synthetase and related enzymes | cog/ cog |
8-amino-7-oxononanoate synthase activity | go/ molecular_function |
biosynthetic process | go/ biological_process |
transferase activity, transferring nitrogenous groups | go/ molecular_function |
pyridoxal phosphate binding | go/ molecular_function |
Biotin metabolism | kegg/ kegg pathway |
Metabolic pathways | kegg/ kegg pathway |
Regulation information for DVU2564
(Mouseover regulator name to see its description)
Regulator | Module | Operator |
---|---|---|
DVU0653 | 34 | tf |
DVU0679 | 34 | tf |
DVU0679 DVU0942 |
34 | combiner |
DVU0744 DVU0942 |
34 | combiner |
DVU0813 DVU0942 |
34 | combiner |
DVU0942 | 34 | tf |
DVU1340 DVU1744 |
34 | combiner |
DVU1744 | 34 | tf |
DVU2086 DVU1340 |
34 | combiner |
DVU2675 | 34 | tf |
DVU2675 DVU1340 |
34 | combiner |
DVU3080 | 34 | tf |
DVU3095 | 34 | tf |
DVU3167 | 34 | tf |
DVU3229 DVU0942 |
34 | combiner |
DVU0110 | 254 | tf |
DVU0230 DVU1745 |
254 | combiner |
DVU1063 | 254 | tf |
DVU1517 | 254 | tf |
DVU1572 DVU0110 |
254 | combiner |
DVU1788 DVU1517 |
254 | combiner |
DVU2567 | 254 | tf |
DVU2690 | 254 | tf |
DVU2802 DVU0230 |
254 | combiner |
DVU2802 DVU1788 |
254 | combiner |
DVU2909 DVU2690 |
254 | combiner |
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
Click on the RegPredict links to explore the motif in RegPredict.
Motif Id | e-value | Consensus | Motif Logo | RegPredict |
---|---|---|---|---|
67 | 0.00e+00 | AcaTTGAaAATCaTaaTCAATA | RegPredict | |
68 | 1.50e-01 | ACACcaAtAtaCCGcaACaTG | RegPredict | |
483 | 2.40e+02 | TcCgGgGtGCGCc | RegPredict | |
484 | 1.20e+04 | aCtTCaGGagaa.G | RegPredict |
Functional Enrichment for DVU2564
Function | System |
---|---|
7-keto-8-aminopelargonate synthetase and related enzymes | cog/ cog |
8-amino-7-oxononanoate synthase activity | go/ molecular_function |
biosynthetic process | go/ biological_process |
transferase activity, transferring nitrogenous groups | go/ molecular_function |
pyridoxal phosphate binding | go/ molecular_function |
Biotin metabolism | kegg/ kegg pathway |
Metabolic pathways | kegg/ kegg pathway |
Module neighborhood information for DVU2564
Gene | Common Name | Description | Module membership |
---|---|---|---|
DVU0182 | radical SAM domain-containing protein | 65, 254 | |
DVU0273 | hypothetical protein DVU0273 | 34, 191 | |
DVU0303 | hypothetical protein DVU0303 | 34, 191 | |
DVU0304 | hypothetical protein DVU0304 | 34, 191 | |
DVU0491 | HDIG domain-containing protein | 178, 254 | |
DVU0574 | None | 226, 254 | |
DVU0762 | hypothetical protein DVU0762 | 34, 191 | |
DVU0763 | GGDEF domain-containing protein | 34, 191 | |
DVU1055 | heptosyltransferase family protein | 160, 254 | |
DVU1066 | gpt | xanthine-guanine phosphoribosyltransferase | 221, 254 |
DVU1258 | glnN | glutamine synthetase, type III | 254, 270 |
DVU1284 | priA | primosomal protein n' | 254, 305 |
DVU1390 | hypothetical protein DVU1390 | 139, 254 | |
DVU1394 | hypothetical protein DVU1394 | 228, 254 | |
DVU1395 | C4-type zinc finger DksA/TraR family protein | 65, 254 | |
DVU1429 | ychF | GTP-dependent nucleic acid-binding protein EngD | 254, 270 |
DVU1477 | hypothetical protein DVU1477 | 233, 254 | |
DVU1873 | ppiB-2 | peptidyl-prolyl cis-trans isomerase B | 215, 254 |
DVU2188 | primase | 183, 254 | |
DVU2377 | hypothetical protein DVU2377 | 34, 191 | |
DVU2378 | AraC family transcriptional regulator | 34, 191 | |
DVU2381 | hypothetical protein DVU2381 | 27, 34 | |
DVU2382 | hypothetical protein DVU2382 | 155, 254 | |
DVU2383 | TonB dependent receptor domain-containing protein | 34, 191 | |
DVU2434 | hypothetical protein DVU2434 | 230, 254 | |
DVU2561 | short chain dehydrogenase/reductase family oxidoreductase | 254, 311 | |
DVU2564 | bioF | 8-amino-7-oxononanoate synthase | 34, 254 |
DVU2566 | lysA-2 | diaminopimelate decarboxylase | 254, 311 |
DVU2571 | feoB | ferrous iron transport protein B | 34, 191 |
DVU2572 | ferrous iron transport protein A | 34, 191 | |
DVU2573 | hypothetical protein DVU2573 | 34, 191 | |
DVU2574 | ferrous ion transport protein | 34, 191 | |
DVU2641 | lipoprotein | 119, 254 | |
DVU2642 | alanyl-tRNA synthetase family protein | 254, 305 | |
DVU2680 | flavodoxin | 34, 191 | |
DVU2681 | hypothetical protein DVU2681 | 34, 191 | |
DVU2971 | glycosyl transferase family protein | 103, 254 | |
DVU3118 | hypothetical protein DVU3118 | 230, 254 | |
DVU3123 | HD domain-containing protein | 254, 269 | |
DVU3124 | hypothetical protein DVU3124 | 34, 269 | |
DVU3219 | hypothetical protein DVU3219 | 211, 254 | |
DVU3279 | cobT | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 254, 270 |
DVU3330 | hypothetical protein DVU3330 | 17, 34 | |
DVU3331 | hypothetical protein DVU3331 | 34, 191 | |
DVU3332 | heavy metal translocating P-type ATPase | 34, 191 | |
DVU3333 | hypothetical protein DVU3333 | 34, 191 | |
DVU3341 | hypothetical protein DVU3341 | 252, 254 | |
DVU3376 | sulfatase family protein | 238, 254 | |
DVU3378 | YbaK/EbsC protein | 84, 254 |
Gene Page Help
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Our circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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