Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU0821(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU0821
|Gene||Common Name||Description||Module membership|
|GSU0085||GSU0085||heterodisulfide reductase, cytochrome reductase subunit (VIMSS)||8, 196|
|GSU0086||GSU0086||hypothetical protein (VIMSS)||8, 323|
|GSU0289||GSU0289||conserved hypothetical protein (VIMSS)||8, 253|
|GSU0316||GSU0316||hypothetical protein (VIMSS)||8, 191|
|GSU0512||GSU0512||conserved hypothetical protein (VIMSS)||8, 278|
|GSU0656||ilvE||branched-chain amino acid aminotransferase (NCBI)||75, 183|
|GSU0703||GSU0703||hypothetical protein (VIMSS)||8, 129|
|GSU0821||GSU0821||conserved hypothetical protein (VIMSS)||8, 75|
|GSU0879||cheV||chemotaxis protein CheV (NCBI)||8, 212|
|GSU0934||GSU0934||hypothetical protein (VIMSS)||8, 164|
|GSU1048||GSU1048||SEC-C motif domain protein (VIMSS)||8, 47|
|GSU1216||cydC||transport ATP-binding protein CydC (NCBI)||8, 181|
|GSU1246||dgt||deoxyguanosinetriphosphate triphosphohydrolase, putative (NCBI)||75, 154|
|GSU1262||GSU1262||membrane protein, putative (VIMSS)||75, 176|
|GSU1287||GSU1287||methyl accepting chemotaxis protein, putative (VIMSS)||8, 131|
|GSU1311||glk||glucose-6-phosphate isomerase (NCBI)||8, 205|
|GSU1314||GSU1314||membrane protein, putative (VIMSS)||75, 136|
|GSU1450||nth||endonuclease III, putative (NCBI)||75, 227|
|GSU1488||GSU1488||membrane protein, putative (VIMSS)||75, 222|
|GSU1489||GSU1489||membrane protein, putative (VIMSS)||75, 199|
|GSU1491||GSU1491||type IV pilus biogenesis protein PilB (VIMSS)||51, 75|
|GSU1492||pilT-4||twitching motility protein PilT (NCBI)||75, 208|
|GSU1493||GSU1493||type IV pilus biogenesis protein PilC (VIMSS)||75, 313|
|GSU1517||rpmI||ribosomal protein L35 (NCBI)||75, 161|
|GSU1544||GSU1544||hypothetical protein (VIMSS)||8, 105|
|GSU1657||GSU1657||DNA internalization-related competence protein ComEC/Rec2 (VIMSS)||8, 225|
|GSU1823||GSU1823||hypothetical protein (VIMSS)||8, 140|
|GSU1840||GSU1840||PAP2 family protein (VIMSS)||8, 219|
|GSU1998||GSU1998||transporter, putative (VIMSS)||8, 99|
|GSU2099||GSU2099||sensory box protein, putative (VIMSS)||8, 276|
|GSU2291||GSU2291||phospho-2-dehydro-3-deoxyheptonate aldolase (VIMSS)||75, 227|
|GSU2332||GSU2332||hypothetical protein (VIMSS)||8, 47|
|GSU2588||lpdA-2||alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase (NCBI)||75, 153|
|GSU2622||GSU2622||HAMP domain/GAF domain/HD domain protein (NCBI)||8, 269|
|GSU2976||GSU2976||DedA family protein (VIMSS)||8, 176|
|GSU3004||GSU3004||cobalt transport protein CbiM (RefSeq)||75, 89|
|GSU3310||GSU3310||hypothetical protein (VIMSS)||8, 47|
|GSU3382||GSU3382||hypothetical protein (VIMSS)||8, 176|
|GSU3384||GSU3384||cardiolipin synthetase, putative (VIMSS)||8, 231|
|GSU3463||gidB||glucose-inhibited division protein B (NCBI)||8, 71|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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