Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU0289(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU0289
|Gene||Common Name||Description||Module membership|
|GSU0085||GSU0085||heterodisulfide reductase, cytochrome reductase subunit (VIMSS)||8, 196|
|GSU0086||GSU0086||hypothetical protein (VIMSS)||8, 323|
|GSU0227||GSU0227||type II DNA modification methyltransferase, putative (NCBI)||164, 253|
|GSU0250||GSU0250||conserved hypothetical protein (VIMSS)||25, 253|
|GSU0279||GSU0279||cadherin domain/calx-beta domain protein (NCBI)||45, 253|
|GSU0289||GSU0289||conserved hypothetical protein (VIMSS)||8, 253|
|GSU0316||GSU0316||hypothetical protein (VIMSS)||8, 191|
|GSU0474||GSU0474||sensory box/GGDEF family protein (VIMSS)||40, 253|
|GSU0512||GSU0512||conserved hypothetical protein (VIMSS)||8, 278|
|GSU0566||GSU0566||glutaredoxin family protein (NCBI)||47, 253|
|GSU0621||GSU0621||hypothetical protein (NCBI)||60, 253|
|GSU0703||GSU0703||hypothetical protein (VIMSS)||8, 129|
|GSU0821||GSU0821||conserved hypothetical protein (VIMSS)||8, 75|
|GSU0853||GSU0853||CBS domain protein (VIMSS)||65, 253|
|GSU0863||GSU0863||conserved hypothetical protein (VIMSS)||57, 253|
|GSU0879||cheV||chemotaxis protein CheV (NCBI)||8, 212|
|GSU0934||GSU0934||hypothetical protein (VIMSS)||8, 164|
|GSU0970||GSU0970||conserved hypothetical protein (VIMSS)||153, 253|
|GSU1009||hflX||GTP-binding protein (NCBI)||164, 253|
|GSU1047||GSU1047||conserved hypothetical protein (VIMSS)||181, 253|
|GSU1048||GSU1048||SEC-C motif domain protein (VIMSS)||8, 47|
|GSU1190||GSU1190||conserved hypothetical protein (VIMSS)||46, 253|
|GSU1216||cydC||transport ATP-binding protein CydC (NCBI)||8, 181|
|GSU1287||GSU1287||methyl accepting chemotaxis protein, putative (VIMSS)||8, 131|
|GSU1311||glk||glucose-6-phosphate isomerase (NCBI)||8, 205|
|GSU1544||GSU1544||hypothetical protein (VIMSS)||8, 105|
|GSU1548||GSU1548||hypothetical protein (VIMSS)||40, 253|
|GSU1562||GSU1562||conserved hypothetical protein TIGR00106 (VIMSS)||164, 253|
|GSU1573||GSU1573||CAAX amino terminal protease family protein (NCBI)||181, 253|
|GSU1657||GSU1657||DNA internalization-related competence protein ComEC/Rec2 (VIMSS)||8, 225|
|GSU1770||GSU1770||hypothetical protein (VIMSS)||133, 253|
|GSU1823||GSU1823||hypothetical protein (VIMSS)||8, 140|
|GSU1840||GSU1840||PAP2 family protein (VIMSS)||8, 219|
|GSU1998||GSU1998||transporter, putative (VIMSS)||8, 99|
|GSU2082||GSU2082||conserved hypothetical protein (VIMSS)||253, 321|
|GSU2099||GSU2099||sensory box protein, putative (VIMSS)||8, 276|
|GSU2116||GSU2116||hypothetical protein (VIMSS)||181, 253|
|GSU2159||GSU2159||hypothetical protein (VIMSS)||6, 253|
|GSU2332||GSU2332||hypothetical protein (VIMSS)||8, 47|
|GSU2622||GSU2622||HAMP domain/GAF domain/HD domain protein (NCBI)||8, 269|
|GSU2750||GSU2750||conserved domain protein (VIMSS)||57, 253|
|GSU2772||GSU2772||ISGsu3, transposase (VIMSS)||84, 253|
|GSU2930||GSU2930||cytochrome c family protein (VIMSS)||253, 321|
|GSU2976||GSU2976||DedA family protein (VIMSS)||8, 176|
|GSU3118||regX3||DNA-binding response regulator (NCBI)||253, 278|
|GSU3310||GSU3310||hypothetical protein (VIMSS)||8, 47|
|GSU3382||GSU3382||hypothetical protein (VIMSS)||8, 176|
|GSU3384||GSU3384||cardiolipin synthetase, putative (VIMSS)||8, 231|
|GSU3463||gidB||glucose-inhibited division protein B (NCBI)||8, 71|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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