Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU0920(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU0920
|Gene||Common Name||Description||Module membership|
|GSU0120||GSU0120||hydrogenase maturation protease (VIMSS)||82, 141|
|GSU0264||GSU0264||drug resistance transporter, Bcr/CflA family (VIMSS)||82, 141|
|GSU0275||GSU0275||hypothetical protein (VIMSS)||82, 141|
|GSU0278||GSU0278||outer membrane efflux protein (VIMSS)||82, 141|
|GSU0291||cheR||CheR methyltransferase, SAM binding domain protein, putative (NCBI)||36, 296|
|GSU0375||gcvT||glycine cleavage system T protein (NCBI)||296, 304|
|GSU0376||gcvH-1||glycine cleavage system H protein (NCBI)||153, 296|
|GSU0377||GSU0377||glycine cleavage system P protein, subunit 1 (VIMSS)||153, 296|
|GSU0378||GSU0378||glycine cleavage system P protein, subunit 2 (VIMSS)||153, 296|
|GSU0379||GSU0379||biotin/lipoate A/B protein ligase family protein (NCBI)||153, 296|
|GSU0380||lipA||lipoic acid synthetase (NCBI)||153, 296|
|GSU0381||GSU0381||lipoprotein, putative (VIMSS)||274, 296|
|GSU0382||GSU0382||conserved hypothetical protein (VIMSS)||153, 296|
|GSU0400||GSU0400||methyl-accepting chemotaxis protein (VIMSS)||82, 156|
|GSU0425||fliR||flagellar biosynthesis protein FliR (NCBI)||82, 141|
|GSU0426||flhB||flagellar biosynthetic protein FlhB (NCBI)||82, 275|
|GSU0698||GSU0698||PBS lyase HEAT-like repeat protein (NCBI)||296, 304|
|GSU0766||GSU0766||methyl-accepting chemotaxis protein, putative (VIMSS)||82, 272|
|GSU0920||GSU0920||hypothetical protein (NCBI)||82, 296|
|GSU0951||GSU0951||transcriptional regulator, TetR family (VIMSS)||82, 296|
|GSU1097||pstA||phosphate ABC transporter, permease protein (NCBI)||82, 141|
|GSU1294||GSU1294||methyl-accepting chemotaxis protein (VIMSS)||82, 190|
|GSU1304||GSU1304||methyl-accepting chemotaxis protein (VIMSS)||82, 155|
|GSU1315||merA-1||mercuric reductase (NCBI)||296, 304|
|GSU1326||recG||ATP-dependent DNA helicase RecG (NCBI)||296, 298|
|GSU2160||GSU2160||hypothetical protein (VIMSS)||78, 82|
|GSU2186||GSU2186||conserved hypothetical protein (VIMSS)||82, 190|
|GSU2187||GSU2187||ABC transporter, permease protein (VIMSS)||82, 190|
|GSU2188||GSU2188||ABC transporter, ATP-binding protein (VIMSS)||82, 190|
|GSU2189||GSU2189||sensor histidine kinase (VIMSS)||82, 190|
|GSU2299||GSU2299||cytochrome c family protein (NCBI)||82, 141|
|GSU2336||otsB||trehalose-phosphatase (NCBI)||296, 300|
|GSU2385||GSU2385||hypothetical protein (VIMSS)||82, 278|
|GSU2388||GSU2388||sensory box histidine kinase (VIMSS)||82, 155|
|GSU2401||GSU2401||sensory box histidine kinase/response regulator (VIMSS)||82, 141|
|GSU2466||GSU2466||hypothetical protein (VIMSS)||39, 296|
|GSU2531||GSU2531||sensory box histidine kinase (VIMSS)||79, 82|
|GSU2535||GSU2535||response regulator (VIMSS)||82, 224|
|GSU2573||GSU2573||hypothetical protein (VIMSS)||104, 296|
|GSU2577||GSU2577||hypothetical protein (VIMSS)||296, 304|
|GSU2580||GSU2580||hypothetical protein (VIMSS)||82, 141|
|GSU2671||GSU2671||hypothetical protein (VIMSS)||82, 304|
|GSU2673||GSU2673||hypothetical protein (VIMSS)||144, 296|
|GSU2676||GSU2676||membrane protein, putative (VIMSS)||152, 296|
|GSU2780||GSU2780||hypothetical protein (VIMSS)||165, 296|
|GSU2781||GSU2781||efflux transporter, RND family, MFP subunit (NCBI)||130, 296|
|GSU2782||GSU2782||AcrB/AcrD/AcrF family protein (VIMSS)||278, 296|
|GSU2783||GSU2783||HDIG domain protein (VIMSS)||147, 296|
|GSU2973||GSU2973||lipoprotein, putative (VIMSS)||59, 296|
|GSU3053||fliA||RNA polymerase sigma factor for flagellar operon (NCBI)||296, 312|
|GSU3104||prfA||peptide chain release factor 1 (NCBI)||82, 140|
|GSU3154||GSU3154||cytochrome c nitrite reductase, catalytic subunit NrfA, putative (VIMSS)||16, 82|
|GSU3221||GSU3221||cytochrome c family protein (NCBI)||6, 82|
|GSU3227||GSU3227||hypothetical protein (VIMSS)||82, 141|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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